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Programming Tools and Functions
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The DARWIN Manual ©
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Example and probability estimates
The Reference Guide
Programming Tools and Functions
ASCII to Integer
Assignment
Enumerate
Check Assignment
Error Messages
Expression Evaluation
Boolean Evaluation
Short if-then-fi
Lowercase
Names
Delay Evaluation
Return
Specify Unevaluated
Trace
Trapping Errors
Types Checking
Uppercase
Sets, Lists, Arrays and Strings
Append
Object Copy
Length of an Object
Operator
Sorting
Union
Subset
Intersect
Member
Minus
Searching Functions
Approximate string Search
Best String Match
Ordered Searches
Searching Arrays
Searching Sequence Databases
Searching for SGML Tags
Case Sensitive Search string
Case Insensitive Search string
Graphic Functions
Plot a Distribution
Create Dot Plot
Plot
ViewPlot
DrawPlot
Statistical Functions
Randomization Functions
Mathematical Functions
The Absolute Value Function
The Arc-tangent Function
The Cosine Function
The Error Function
The Complimentary Error Function
The Inverse Complementary Error Function
The Exponential Function
The Factorial Function
The Floor Function
Gaussian Elimination
The Natural Logarithm Function
The Logarithm base 10 Function
The Maximum Function
Maximize Function
The Minimum Function
Minimize Function
Minimize2D Function
DisconMinimize Function
The Modulus Function
The Rounding Function
The Sine Function
The Square Root Function
Summation
The Tangent Function
Matrix Transposition
The Truncate Function
The Riemann Zeta Function
The Zip Function
Printing Routines
Linear Print
Pretty Print
Format Print
Pretty Print a Square Matrix
Print Information about a Procedure
String Format Scan
String Print
Input and Output Functions
Appending to a File
File Pointer Offset
Find Key
Load a Library Function
Loading a Genetic Database
Read Lines
readpipe
OpenPipe
ReadLine
ReadOffsetLine
Store Key
Write to a File
Nucleic, Amino Acid and Genetic Code Functions
Nucleic Acids
Three Letter Nucleic to Integer
One Letter Nucleic to Integer
Full Name to Integer
Integer to Three Letter Nucleic
Integer to One Letter Nucleic
Integer to Full Name Nucleic
Integer to Full Name Nucleic
Amino Acids
Amino Acid Count
Amino Acid Frequency
Molecular Weight
Most Frequent
k
-Grams
Three Letter Amino Acid to Integer
One Letter Amino Acid to Integer
Amino Acid to Integer
Integer to Three Letter Amino Acid
Integer to One Letter Amino Acid
Integer to Amino Acid
Standard Genetic Code
RNA to Amino Acid
Nucleic to Codon Number
Codon Number to Nucleic
Dayhoff and Mutation Matrix Functions
Dayhoff (Original) Calculation
Dayhoff (Enhanced) Matrices
Search for a Dayhoff Matrix
Nucleic Peptide Matching Functions
Pairwise Matching Functions
Backwards Dynamic Programming
Dynamic Programming
Find Best PAM Distance
Best Pam Shake
Plot Pam
GetOffset
GlobalAlign Match
Refine Log
Refine Shake
All against All Functions
Graph and Tree Functions
Tree Construction Functions
Bisection Tree
Multiple Sequence Alignment and Probabilistic Ancestral Sequence Functions
Secondary Structure Prediction Functions
Enzyme Digestion Functions
System Functions and Variables
Date
DPU Time
Get Process Identification
Garbage Collection
help
Hostname
Running Time
Set
Sleep
System commands
TimedCallSystem
Time
HTML Functions
Interprocessor Functions
External Function Call Functions
Types, Operators and Expressions
Simple Data Types
Relational and Logical Operators
The Order of Operations
Error Messages
Gaston Gonnet
1998-09-15