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Dayhoff and Mutation Matrix Functions



Table: The selectors for the DayMatrix structured type.
1.1 
Table: The selectors for the DayMatrix structured type.
Selector Description
FixedDel Adjusted deletion penalty
IncDel Deletion penalty increment
MaxOffDiag Max. value not on the diagonal.
MaxSim Max. value in the Dayhoff matrix.
MinSim Min. value in the Dayhoff matrix.
PamNumber PAM distance for which this
  matrix was computed.
Sim, i, j The similarity score for amino
  acid i and amino acid j.
type The type of the Dayhoff matrix.
  ie. Peptide, DNA.





 

Gaston Gonnet
1998-09-15