Nucleic Peptide Matching Functions

Table: Selectors for the NucPepMatch structured type.

1.1 

Table: Selectors for the NucPepMatch structured type.

Selector	Description
Sim	Similarity score for the match.
NucOffset	Offset of the nucleotide sequence in NucDB.
PepOffset	Offset of the peptide sequence in PepDB.
NucLength	Length of the nucleotide sequence.
PepLength	Length of the peptide sequence.
PamNumber	The estimate PAM distance for the match.
PamVariance	The estimated PAM variance for the match.
IntronScoring	The function for scoring introns.
NucGaps	Gaps in the nucleotide sequence from the alignment.
PepGaps	Gaps in the peptide sequence from the alignment.
Introns	The list of suspected introns.

GetIntrons AlignedPeptides AlignNucPepMatch GetAllNucPepMatches NucPepBackDynProg FindNucPepPam BestLocalAlignNucPep NucPepDynProg NucPepMatch ParallelAllNucPepMatches AlignNucPepAll GlobalAlign LocalAlignNucPep NucPepRegions DynProgNucPepString NSubGene CreateLinearIntron CreateLinearZeroIntron CreateLinearProbIntron LinearIntron2 Gene IntronModel IntronScores IntronScoring Intron PredictGenes PSubGene VisualizeGene Region