Q. Zhong, A.G. Busetto, J.P. Fededa, J.M. Buhmann, D.W. Gerlich, "Unsupervised Modeling of Cell Morphology Dynamics for High-throughput Time-lapse Microscopy",
Nature Methods, in press (2012) [paper link]
T.C. Käser Jacober, A.G. Busetto, G.-M. Baschera, J. Kohn, K. Kucian, M. von Aster, M. Gross, "Modelling and Optimizing the Process of Learning Mathematics",
Springer LNCS Proc. 11th Int. Conf. on Intelligent Tutoring Systems (ITS 2012), in press (2012) [paper link]
M. Haghir Chehreghani, A.G. Busetto, J.M. Buhmann, "Information Theoretic Model Validation for Spectral Clustering",
Journal of Machine Learning Research (JMLR) Proc. 15th Int. Conf. on Artificial Intelligence and Statistics
(AISTATS 12), pp.495-503 (2012) [paper link]
G.-M. Baschera, A.G. Busetto, S. Klingler, J.M. Buhmann, M. Gross, "Modeling Engagement Dynamics in Spelling Learning",
Springer LNCS Proc. 15th Int. Conf. on Artificial Intelligence in Education (AIED 11), pp.31-38 (2011) (BEST STUDENT PAPER AWARD) [paper link]
A.G. Busetto, J.M. Buhmann, "Stable Bayesian Parameter Estimation for Biological Dynamical Systems",
IEEE CS Press Proc. 12th IEEE Int. Conf. on Computational Science and Engineering (CSE 09), pp.148-157 (2009) (BEST PAPER AWARD) [paper link]
A.G. Busetto, C.S. Ong, J.M. Buhmann, "Optimized Expected Information Gain for Nonlinear Dynamical Systems",
ACM Series 382 Proc. 26th Int. Conf. on Machine Learning (ICML 09), pp.97-104 (2009) [paper link]
A.G. Busetto, J.M. Buhmann, "Structure Identification by Optimized Interventions",
Journal of Machine Learning Research (JMLR) Proc. 12th Int. Conf. on Artificial Intelligence and Statistics
(AISTATS 09), pp.57-64 (2009) [paper link]
M. Morandi Cecchi, A.G. Busetto, "Computational Mechanical Modeling of the Behavior of Carbon Nanotubes",
Proc. 7th Int. Conf. on Systems Theory and
Scientific Computation (STSC 07), pp.58-65 (2007) [paper link]
Theses and Reports
A.G. Busetto, "Computational Methods for Carbon Nanotubes",
Department of Pure and Applied Mathematics, University of Padua, 2007,
supervised by Prof. Dr. M. Morandi Cecchi ("Toni Mian" BEST THESIS AWARD);
A.G. Busetto, "Error Control: Detection and Correction",
Department of Information Engineering, University of Padua, 2005,
supervised by Prof. Dr. M. Dal Passo.
Conferences, Talks and Posters
M.H. Chehreghani, A.G. Busetto, J.M. Buhmann, "Cluster Model Validation by Maximizing Approximation Capacity",
NIPS 2011 Workshop: Model Order Selection, Granada, Spain, Dec 16-17, 2011
W.J. Kovacs, K.M. Walter, N. Fankhauser, J. Vogt, D.J. Stekhoven, A.G. Busetto, E. Sabidó, N. Zamboni, V. Roth, P. Bühlmann, J.M. Buhmann, R. Aebersold, W. Krek, "Metabolic Networks Revealed by Transcriptional Profiling of the Fasting-to-feeding and the Feeding-to-fasting Transition in Mouse Liver",
1st International SystemsX.ch Conference on Systems Biology, Basel, Switzerland, Oct 24-26, 2011
J. Vogt, A.G. Busetto, D.J. Stekhoven, "Metabolic Networks Revealed by Transcriptional Profiling of the Fasting-to-feeding and the Feeding-to-fasting Transition in Mouse Liver",
1st International SystemsX.ch Conference on Systems Biology, Basel, Switzerland, Oct 24-26, 2011
M. Sunnaker, E. Zamora-Sillero, A.G. Busetto, A. Wagner, J. Stelling, "Unravelling Mechanisms for Regulation of the Transcription Factor Msn2 in S. cerevisiae",
1st International SystemsX.ch Conference on Systems Biology, Basel, Switzerland, Oct 24-26, 2011
Q. Zhong, A.G. Busetto, J.M. Buhmann, D.W. Gerlich, "Modeling Morphology Dynamics in Live Cell Microscopy by Unsupervised Learning",
EMBO Meeting 2011, Vienna, Austria, Sep 10-13, 2011
A.G. Busetto, M. Sunnaker, S. Dimopoulos, J. Stelling, J.M. Buhmann, "Design of Informative Experiments for the Identification of Stochastic Biological Systems",
Conference on Stochastic Systems Biology 2011 (SSB 11), Monte Verità, Switzerland, Jul 19-23, 2011
A.G. Busetto, Y.M. Marzouk, J.M. Buhmann, organizers of MS126 "Optimal Experimental Design in Science and Engineering",
Society for Industrial and Applied Mathematics
Conf. on Computational Science and Engineering 2011 (SIAM CSE 11), Reno,
Nevada - USA, Feb 28-Mar 4, 2011
A.G. Busetto, M. Sunnaker, S. Dimopoulos, J. Stelling, J.M. Buhmann, "Designing Maximally Informative Experiments in Systems Biology",
Society for Industrial and Applied Mathematics
Conf. on Computational Science and Engineering 2011 (SIAM CSE 11), Reno,
Nevada - USA, Feb 28-Mar 4, 2011
A.G. Busetto, G. Krummenacher, A. Hauser, M.A. Sunnaker, S. Dimopoulos, K. Raman, J. Stelling, J.M. Buhmann, "Large-Scale Optimal Experimental Design for Pathway Identification in Yeast",
SystemsX.ch Day, University of Geneva, Geneva, Switzerland, Nov 1-2, 2010
A.G. Busetto, J.M. Buhmann, "Active Learning of Nonlinear Dynamical Systems",
Cuiphdtalks - University of Geneva, Geneva, Switzerland, May 22, 2010
M. Sunnaker, A.G. Busetto, S. Dimopoulos, E. Zamora-Sillero, J.M. Buhmann, J. Stelling, "Inferring the Topology of a Signaling Pathway from a Single Model",
Competence Center for Systems Physiology and
Metabolic Diseases (CC-SPMD) Retreat 2010, Ittingen, Switzerland, May
27-29, 2010
A.G. Busetto, S. Dimopoulos, M.A. Sunnaker, A. Hauser, C.S. Ong, J. Stelling, J.M. Buhmann, "Active Uncertainty Reduction for Dynamical Systems",
Uncertainty Reduction Workshop, International
Centre for Mathematical Sciences, Royal Society of Edinburgh, Edinburgh,
May 24-28, 2010
A.G. Busetto, S. Dimopoulos, M.A. Sunnaker, A. Hauser, C.S. Ong, J. Stelling, J.M. Buhmann, "Computational Design of Maximally Informative Experiments in Systems Biology",
SystemsX.ch Day, University of Bern, Bern, Switzerland, Nov 18, 2009
M. Sunnaker, S. Dimopoulos, R. Dechant, A.G. Busetto, S. Christen, U. Sauer, J.M. Buhmann, M. Peter, J. Stelling, "Discrimination of Hypothetical Extensions to a Model for Glucose Signaling in S. cerevisiae",
Biovalley Science Day, University of Basel, Basel, Switzerland, Oct 13, 2009
A.G. Busetto, J.M. Buhmann, "Maximizing the Experimentally Available Information in Systems Biology",
University of British Columbia, Mathematics Department, Vancouver, British Columbia - Canada, Aug 31, 2009
A.G. Busetto, J.M. Buhmann, "Optimizing the Experimental Information Gain in Systems Biology",
SystemsX.ch Retreat 2009, Weggis, Switzerland, Sep 11-12, 2009
A.G. Busetto, S. Dimopoulos, M.A. Sunnaker, A. Hauser, C.S. Ong, J. Stelling, J.M. Buhmann, "Designing Maximally Informative Experiments for the Selection of Pathway Models",
10th Int. Conf. on Systems Biology (ICSB 09), Stanford, California - USA, Aug 30-Sep 4, 2009
A.G. Busetto, C.S. Ong, J.M. Buhmann, "On the Design of Maximally Informative Experiments in Biology",
Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany, Jun 5, 2009
A.G. Busetto, C.S. Ong, J.M. Buhmann, "Designing Critical Experiments in Systems Biology",
Competence Center for Systems Physiology and
Metabolic Diseases (CC-SPMD) Retreat 2009, Ittingen, Switzerland, May
7-9, 2009
A.G. Busetto, J.M. Buhmann, "Active Model Selection of Biochemical Dynamical Systems",
Society for Industrial and Applied Mathematics
Conf. on Applications of Dynamical Systems 2009 (SIAM DS 09), Snowbird,
Utah - USA, May 17-21, 2009;
A.G. Busetto, C.S. Ong, J.M. Buhmann, "Extracting the Measurement Information Core for Model Selection of Dynamical Systems",
Snowbird Learning Workshop, Clearwater, Florida - USA, Apr 13-16, 2009;
A.G. Busetto, B. Fischer, J.M. Buhmann, "Optimal Experimental Design for the Identification of Dynamical Cell Subpopulations",
9th Int. Conf. on Systems Biology (ICSB 08), Göteborg, Sweden, Aug 22-28, 2008;
A.G. Busetto, "Identification of Dynamical Subpopulations, Optimal Experiment Design and More",
Talks.Cam - Cambridge University, Cambridge, UK, May 30, 2008.
A.G. Busetto, B. Fischer, J.M. Buhmann, "Density Estimation of Initial Conditions for Populations of Dynamical Systems",
PASCAL2 Workshop on Approximate Inference in
Stochastic Processes and Dynamical Systems (AISPDS 08), Cumberland
Lodge, UK, May 27-29, 2008,
M. Morandi Cecchi, A.G. Busetto, "Computational Mechanics of Carbon Nanotubes by the Use of Techniques to Treat Graphene Sheets",
14th Int. Conf. on Finite Elements in Flow Problems
2007 (FEF 07), Santa Fe, New Mexico - USA, Mar 26-28, 2007.
Advised Theses and Projects
S. Dwivedi, Master Thesis "Bayesian Parameter Estimation for Dynamical Biological Systems with Adaptive Sparse Grids",
Department of Computer Science, ETH Zurich, 2011,
advised by Prof. Dr. J.M. Buhmann, advised by A.G. Busetto [pdf link]
S. Dwivedi, Semester Thesis "Variational Uncertainty Propagation for Nonlinear Biological Systems",
Department of Computer Science, ETH Zurich, 2010,
advised by Prof. Dr. J.M. Buhmann, advised by A.G. Busetto [pdf link]
G. Krummenacher, Master Thesis "Large-scale Experimental Design Toolbox for Systems Biology",
Department of Computer Science, ETH Zurich, 2010,
advised by Prof. Dr. J.M. Buhmann, advised by A.G. Busetto [pdf link]
A. Hauser, Master Thesis "Entropy-based Experimental Design for Model Selection in Systems Biology",
Department of Computer Science, ETH Zurich, 2009,
advised by Prof. Dr. J.M. Buhmann, advised by A.G. Busetto (ETH MEDAL for Master Thesis) [pdf link]